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Publication from : Yin Chen <yin.chen(a)egi.eu>
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Dear all
I'm pleased to announce a new upcoming webinar form BioMed which is one of the biggest EGI communities in Life Science.The biomed VO is operated on the EGI infrastructure and supported by 15 sites, delivering access to a large number of heterogeneous resources. In 2018, Biomed users executed more than 2.5 million jobs corresponding to 439 years of CPU.
One of the flagship science gateways of BioMed is the Virtual Imaging Platform (VIP) currently supported by EGI-ACE as one of the Data Spaces in WP5.
It would be a very unique opportunity to meet the team and learn their advanced service solutions and experience with EGI services. Register now to reserve your place!
Title: The Virtual Imaging Platform: Scientific Applications as a Service and Beyond
Date and Time: Wednesday, 23rd March 2022 |14:00 -15:00 PM CET
Description:
The Virtual Imaging Platform (VIP) is a web portal for medical simulation and image data analysis. It leverages resources available in the EGI biomed Virtual Organisation to offer an open service to academic researchers worldwide. In March 2022, VIP counts 1380 registered users and about 20 applications publicly available. In the last few years, VIP has addressed interoperability and reproducibility concerns, in the larger scope of a FAIR (Findable, Accessible, Interoperable, Reusable) approach to scientific data analysis.
The presentation will give an overview of VIP and its main interests for the audience: (i) use existing applications as a service on VIP, (ii) import your own applications to make them available to the community, (iii) benefit from EGI biomed resources in a transparent way and (iv) foster open and reproducible science.
The presentation will be followed by two demos, one focusing on useful information on joining VIP (home page and account creation/EGI Check-in authentication) and the second one on the main VIP functionalities, such as executing an application and monitoring its status.
Agenda: https://indico.egi.eu/event/5824/
Registration: https://us02web.zoom.us/webinar/register/WN_Kc10jHL_SS-bWwyFtQg92g
Speakers: Sorina Pop, Axel Bonnet, and Alexandre Cornier, CNRS Research Engineer, CREATIS
Dr Sorina Pop is a CNRS research engineer at Creatis since 2007, currently in charge of the Virtual Imaging Platform (VIP), which counts more than 1300 registered users. Since her Ph.D. degree in 2013, her activity has been focused on optimizing the execution of medical image processing applications on heterogeneous distributed systems. In the last few years, she has been particularly interested in enhancing open and reproducible science through her VIP activities, but also through other projects such as the EU OpenAIRE-Connect and EGI-ACE projects and the France Life Imaging (FLI) platform, where she is member of the steering committee of the Information Analysis and Management node. She is also manager of the biomed Virtual Organisation and member of the EGI-ACE Project.
Axel Bonnet is a CNRS research engineer at Creatis since 2016. After he obtained his computing engineering diploma at Grenoble INP-Ensimag in 2011, he worked for 5 years in different companies, improving his skills in software architecture and software quality on many projects. He integrated Creatis in 2016 as a CNRS research engineer and has worked on the Virtual Imaging Platform (VIP) ever since. His main tasks concern developing new features on VIP, focusing on interoperability with other platforms through a REST API.
Alexandre Cornier is a new member of the VIP team as a CNRS engineer working on the EGI ACE project, more precisely on the authentication part, support and design of neuroimaging applications. He obtained his master 2 in Bioinformatics in 2021 after having done a 6 months internship at Inserm (Magendie Neurocenter) in the Cortical plasticity team. He worked in particular on the project of Dr. Ourania Semelidou on the atypical sensory responses in Autism Spectrum Disorder to develop a full data analysis pipeline.
Please follow our EGI webinar program at: https://www.egi.eu/webinars/
Kind Regards and Looking forward to seeing you all soon!
Yin
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Dr Yin Chen
Community Support Officer
EGI Foundation (Amsterdam, The Netherlands)
W: www.egi.eu | E: yin.chen(a)egi.eu | M: +31 (0)6 3037 3096 | Skype: yin.chen.egi | Twitter: @yinchen16
EGI: Advanced Computing for Research
The EGI Foundation is ISO 9001:2015 and ISO/IEC 20000-1:2011 certified
#####
https://www.egi.eu/about/egi-foundation/team/yin-chen/
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link to this broadcast : https://operations-portal.egi.eu/broadcast/archive/2901
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Publication from : Alessandro Paolini <alessandro.paolini(a)egi.eu>
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Thanks to the VO that replied so far. We extend the deadline till Thu 3rd March to let other VOs provide their feedback.
===================
Dear VO managers,
this year an important change is going to happen to the middleware that you use daily to run your analysis, simulations, and to manage your data:
the authentication and authorisation mechanism will move from X509 personal certificates to federated identities based on tokens.
This means that in order to access all of the EGI services you will need to use your academic/social account, and this account needs to be registered in EGI Check-in (see for example https://docs.egi.eu/users/check-in/signup/ ).
The EGI Cloud Compute service (https://docs.egi.eu/users/cloud-compute/) already moved time ago to the usage of federated identities as authentication system, so the services we refer to are the ones historically called "grid services" such as Computing Elements and Storage Elements (using protocols like SRM, webdav/http, GridFTP, etc.).
We would like to implement this change in a smooth way, and we expect to have a transition period where both X509 and federated identities tokens can be used.
During this transition phase there might be delays in updating the GRID elements to the latest version compliant with tokens, not all of the middleware products will be compliant with tokens at the same time, and the same VO will have to interact with element supporting different authentication methods.
In order to better plan this huge change in the usage of our Infrastructure, we would really appreciate to have your feedback about your experience with the aforementioned services: we ask you to reply to some questions with the aim to understand how this change will affect your normal workflow and to implement it in a way as much transparent to you as possible.
The survey will take only a few minutes to be filled in and it is oriented to the VO managers: we would like to have one reply per VO.
Of course, before replying to the survey, you can collect the relevant information from the most-active users, or in case you can also ask one of them to reply on behalf of your VO.
Llnk to the survey: https://survey.egi.eu/812154?lang=en
Thanks for your collaboration,
EGI Operations
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link to this broadcast : https://operations-portal.egi.eu/broadcast/archive/2900
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EGI BROADCAST TOOL : https://operations-portal.egi.eu/broadcast/send
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Publication from : Yin Chen <yin.chen(a)egi.eu>
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Dear All
I'm pleased to announce a new webinar in March. ENES is an ESFRI Research Infrastructure for Climate research. It joins the EGI-ACE project as one of the Data Spaces. They will share their advanced service solutions using EGI Cloud. Register now to reserve your place!
Title: ENES Data Space Service
Date and Time: Wednesday, 9th March 2022 |14:00 -15:00 PM CET
Description: The ENES Data Space delivers an open, scalable and cloud-enabled data science environment for climate data analysis on top of the EOSC Compute Platform. It provides access to a set of specific CMIP variable-centric collections to support meteorological and industrial researchers in realistic climate model analysis experiments. Data is downloaded and kept in sync with the ESGF federated data archive. This webinar will provide a general overview of the ENES Data Space service and its main features. In addition, the Synda command line tool used to explore, download and place files within the adequat directories from the ESGF archive will be introduced. Moreover, the webinar will include a tutorial on how to join the ENES Data Space service and a short demo for the participants to get started with the data analysis and visualization features.
Agenda: https://indico.egi.eu/event/5743/
Registration: https://us02web.zoom.us/webinar/register/WN_ijOg_RPlQJyj1OetvBqHyA
Speakers: Fabrizio Antonio & Atef Ben Nasser
Fabrizio Antonio was awarded a Master’s Degree with first-class honors in Computer Engineering from the University of Salento, Faculty of Engineering, in April 2016, with a thesis on High Performance Computing and Big Data. In May 2016, he joined the Advanced Scientific Computing (ASC) Division of CMCC. Since 2019, he has been contributing to the Dashboard Working Team in the context of the Earth System Grid Federation. He is also currently involved in some European Open Science Cloud projects, like EOSC-Pillar and EGI-ACE, as well as in the IS-ENES3 project. His research activities focus on parallel, distributed and cloud computing and, in particular, on distributed data management and high-performance big data analytics and mining for eScience in the context of climate change.
Atef Ben Nasser is a research engineer working on climate data management within the ESPRI team at CNRS-IPSL since 2015. With a background in software engineering, he contributes to the development and enhancement of data publication and replication tools and the automatization of the climate simulation data publication chain, as well as the support of various actors within the community to better use the existing tools. He is a key developer of the ESGF community and a member of the ES-DOC technical committee.
Please follow our EGI webinar program at: https://www.egi.eu/webinars/
Kind Regards and Looking forward to seeing you all soon!
Yin
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Dr Yin Chen
Community Support Officer
EGI Foundation (Amsterdam, The Netherlands)
W: www.egi.eu | E: yin.chen(a)egi.eu | M: +31 (0)6 3037 3096 | Skype: yin.chen.egi | Twitter: @yinchen16
EGI: Advanced Computing for Research
The EGI Foundation is ISO 9001:2015 and ISO/IEC 20000-1:2011 certified
#####
https://www.egi.eu/about/egi-foundation/team/yin-chen/
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link to this broadcast : https://operations-portal.egi.eu/broadcast/archive/2898
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Dear all,
I have added the FI, NO and SE group managers to this contact list,
vo-managers(a)lists.eiscat.se.
This is just a test but I would appreciate confirmation that you
received this.
All the best,
--
==================================
Dr. Carl-Fredrik Enell
Scientific data services developer
EISCAT Scientific Association
PO Box 812
SE-98128 Kiruna, Sweden
Telephone (work): +46 980 790 88
or +46 70 660 86 57
==================================
Dear administrator,
new application for VO EGI eiscat.se VO was created under ID=90773 by user: dfadf63fcb2723480357cb8ff9f0570cda7d2872ca24e65bfe21f0154f238ce2(a)egi.eu / https://aai.egi.eu/proxy/saml2/idp/metadata.php. As soon as user verifies his/her email address (application in state VERIFIED), it is possible to approve or reject application.
Application detail with all user submitted data where you can approve / reject application:
https://perun.egi.eu/egi/gui/?vo/appdetail?id=90773
If there was any error during application creation, information follows:
--------------------------------------------------
Your NGI Perun management team
Dear administrator,
new application for VO EGI eiscat.se VO was created under ID=90771 by user: 6becdde187d13449ed969718c94fefcf15bda7d69394ed0d182cd2f557fc0e15(a)egi.eu / https://aai.egi.eu/proxy/saml2/idp/metadata.php. As soon as user verifies his/her email address (application in state VERIFIED), it is possible to approve or reject application.
Application detail with all user submitted data where you can approve / reject application:
https://perun.egi.eu/egi/gui/?vo/appdetail?id=90771
If there was any error during application creation, information follows:
--------------------------------------------------
Your NGI Perun management team
Dear administrator,
new application for VO EGI eiscat.se VO was created under ID=90755 by user: 8c25f8f7fd2fc5ca72e5fe04bc5d11c8e9c2ea2b59dce3ef756f8b02fb5b2cd7(a)egi.eu / https://aai.egi.eu/proxy/saml2/idp/metadata.php. As soon as user verifies his/her email address (application in state VERIFIED), it is possible to approve or reject application.
Application detail with all user submitted data where you can approve / reject application:
https://perun.egi.eu/egi/gui/?vo/appdetail?id=90755
If there was any error during application creation, information follows:
--------------------------------------------------
Your NGI Perun management team
Dear administrator,
new application for VO EGI eiscat.se VO was created under ID=90754 by user: 992beff29e6c456d16feeea0cf098d35c5c9844dd592c257a907818835c5a945(a)egi.eu / https://aai.egi.eu/proxy/saml2/idp/metadata.php. As soon as user verifies his/her email address (application in state VERIFIED), it is possible to approve or reject application.
Application detail with all user submitted data where you can approve / reject application:
https://perun.egi.eu/egi/gui/?vo/appdetail?id=90754
If there was any error during application creation, information follows:
--------------------------------------------------
Your NGI Perun management team
Dear administrator,
new application for VO EGI eiscat.se VO was created under ID=90753 by user: dfadf63fcb2723480357cb8ff9f0570cda7d2872ca24e65bfe21f0154f238ce2(a)egi.eu / https://aai.egi.eu/proxy/saml2/idp/metadata.php. As soon as user verifies his/her email address (application in state VERIFIED), it is possible to approve or reject application.
Application detail with all user submitted data where you can approve / reject application:
https://perun.egi.eu/egi/gui/?vo/appdetail?id=90753
If there was any error during application creation, information follows:
--------------------------------------------------
Your NGI Perun management team
Dear administrator,
new application for VO EGI eiscat.se VO was created under ID=90745 by user: 4837b48479c59394fe31148ad764ce3cacc15d88da6cf7271cbd411e01dec5a1(a)egi.eu / https://aai.egi.eu/proxy/saml2/idp/metadata.php. As soon as user verifies his/her email address (application in state VERIFIED), it is possible to approve or reject application.
Application detail with all user submitted data where you can approve / reject application:
https://perun.egi.eu/egi/gui/?vo/appdetail?id=90745
If there was any error during application creation, information follows:
--------------------------------------------------
Your NGI Perun management team
