1:46 p.m.
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EGI BROADCAST TOOL : https://operations-portal.egi.eu/broadcast/send
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Publication from : Yin Chen <yin.chen(a)egi.eu>
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Dear all
I'm pleased to announce a new upcoming webinar form BioMed which is one of the biggest
EGI communities in Life Science.The biomed VO is operated on the EGI infrastructure and
supported by 15 sites, delivering access to a large number of heterogeneous resources. In
2018, Biomed users executed more than 2.5 million jobs corresponding to 439 years of CPU.
One of the flagship science gateways of BioMed is the Virtual Imaging Platform (VIP)
currently supported by EGI-ACE as one of the Data Spaces in WP5.
It would be a very unique opportunity to meet the team and learn their advanced service
solutions and experience with EGI services. Register now to reserve your place!
Title: The Virtual Imaging Platform: Scientific Applications as a Service and Beyond
Date and Time: Wednesday, 23rd March 2022 |14:00 -15:00 PM CET
Description:
The Virtual Imaging Platform (VIP) is a web portal for medical simulation and image data
analysis. It leverages resources available in the EGI biomed Virtual Organisation to offer
an open service to academic researchers worldwide. In March 2022, VIP counts 1380
registered users and about 20 applications publicly available. In the last few years, VIP
has addressed interoperability and reproducibility concerns, in the larger scope of a FAIR
(Findable, Accessible, Interoperable, Reusable) approach to scientific data analysis.
The presentation will give an overview of VIP and its main interests for the audience: (i)
use existing applications as a service on VIP, (ii) import your own applications to make
them available to the community, (iii) benefit from EGI biomed resources in a transparent
way and (iv) foster open and reproducible science.
The presentation will be followed by two demos, one focusing on useful information on
joining VIP (home page and account creation/EGI Check-in authentication) and the second
one on the main VIP functionalities, such as executing an application and monitoring its
status.
Agenda: https://indico.egi.eu/event/5824/
Registration: https://us02web.zoom.us/webinar/register/WN_Kc10jHL_SS-bWwyFtQg92g
Speakers: Sorina Pop, Axel Bonnet, and Alexandre Cornier, CNRS Research Engineer, CREATIS
Dr Sorina Pop is a CNRS research engineer at Creatis since 2007, currently in charge of
the Virtual Imaging Platform (VIP), which counts more than 1300 registered users. Since
her Ph.D. degree in 2013, her activity has been focused on optimizing the execution of
medical image processing applications on heterogeneous distributed systems. In the last
few years, she has been particularly interested in enhancing open and reproducible science
through her VIP activities, but also through other projects such as the EU
OpenAIRE-Connect and EGI-ACE projects and the France Life Imaging (FLI) platform, where
she is member of the steering committee of the Information Analysis and Management node.
She is also manager of the biomed Virtual Organisation and member of the EGI-ACE Project.
Axel Bonnet is a CNRS research engineer at Creatis since 2016. After he obtained his
computing engineering diploma at Grenoble INP-Ensimag in 2011, he worked for 5 years in
different companies, improving his skills in software architecture and software quality on
many projects. He integrated Creatis in 2016 as a CNRS research engineer and has worked on
the Virtual Imaging Platform (VIP) ever since. His main tasks concern developing new
features on VIP, focusing on interoperability with other platforms through a REST API.
Alexandre Cornier is a new member of the VIP team as a CNRS engineer working on the EGI
ACE project, more precisely on the authentication part, support and design of neuroimaging
applications. He obtained his master 2 in Bioinformatics in 2021 after having done a 6
months internship at Inserm (Magendie Neurocenter) in the Cortical plasticity team. He
worked in particular on the project of Dr. Ourania Semelidou on the atypical sensory
responses in Autism Spectrum Disorder to develop a full data analysis pipeline.
Please follow our EGI webinar program at: https://www.egi.eu/webinars/
Kind Regards and Looking forward to seeing you all soon!
Yin
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Dr Yin Chen
Community Support Officer
EGI Foundation (Amsterdam, The Netherlands)
W: www.egi.eu | E: yin.chen(a)egi.eu | M: +31 (0)6 3037 3096 | Skype: yin.chen.egi |
Twitter: @yinchen16
EGI: Advanced Computing for Research
The EGI Foundation is ISO 9001:2015 and ISO/IEC 20000-1:2011 certified
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https://www.egi.eu/about/egi-foundation/team/yin-chen/
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link to this broadcast : https://operations-portal.egi.eu/broadcast/archive/2901
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